Generated:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
Full Display Name:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
Microarray:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
Software:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
Metagenomics:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
Sequencing:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
Targeted Gene Expression:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
Diagnostic Assay:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
RNA sequencing:Article Title: [2209.00693] A large dataset of software mentions in the biomedical literature
Article Snippet: .. The following files are available: pypi synonyms.pkl Python dictionary mapping from a pypi package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 SM1901 R Foundation for Statistical Computing https://www.r-project.org/ foundation/ The R Foundation is a not for profit organization Group of people SM3954 RE-AIM https://re-aim.org/ RE-AIM is a framework to guide the planning and evaluation of programs according to the 5 key RE-AIM outcomes: Reach, Effectiveness, Adoption, Implementation, and Maintenance Project SM5429 iOS Operating system SM6157 Affymetrix https://www.thermofisher. com/uk/en/home/lifescience/microarrayanalysis/affymetrix.html “Affymetrix microarray solutions include necessary components for a microarray experiment, from arrays and reagents to instruments and software” System with multiple components, including software SM16352 nCounter https://nanostring.com/ products/ncounter-analysis- system/ncounter-pro/ System with multiple components, including software SM3461 Arduino https://www.arduino.cc/ System with multiple components, including software SM1127 MiSeq https://emea.illumina. com/systems/sequencing- platforms/miseq.html “applications such as targeted resequencing, metagenomics, small genome sequencing, targeted gene expression profiling” System with multiple components, including software SM8468 Apache https://www.apache.org/ licenses/LICENSE-2.0 License SM338 QUADAS https://www.bristol.ac.uk/ population-health-sciences/ projects/quadas/quadas-2/ A quality assessment tool for diagnostic accuracy studies Tools that are checklists SM1908 RNAseq sequencing technique Method SM5014 SOLiD SOLiD next-generation sequenc- ing technology Method cran synonyms.pkl Python dictionary mapping from a CRAN package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 bioconductor synonyms.pkl Python dictionary mapping from a Bioconductor package and an array of synonyms generated through the Keywords Synonym Generation process 2.4.1 scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved through the SciCrunch API 2.4.2 extra scicrunch synonyms.pkl Python dictionary mapping from a mention found in SciCrunch and its synonyms retrieved by parsing the corresponding URL in SciCrunch 2.4.2 string similarity synonyms.pkl Python dictionary mapping from a mention found in the comm_IDs.tsv.gz corpus and its synonyms retrieved through the Jaro Winkler algorithm, together with the corresponding confidences 2.4.3. ..
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